FastQCFastQC Report
Wed 1 May 2024
EGAF00005394250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206780107
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGCCA5918959928.624416467682746No Hit
TAGGCGGT5379577326.01593247071876No Hit
GGAATATG4657269522.522812119446286No Hit
CTTCATAC4541575121.96330762126939No Hit
GGACTATG4731660.22882568679587734No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)