FastQCFastQC Report
Fri 3 May 2024
EGAF00005394253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150952683
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA4709182631.196415369443947No Hit
GGTCGAGC3916702825.94655969115832No Hit
AAGTTGAT3547166523.498532318236435No Hit
TTAGATTG2729965918.08491141558577No Hit
GTAGATTG8935730.5919556925000135No Hit
CCCACCAA1568450.10390341985508135No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)