FastQCFastQC Report
Fri 10 May 2024
EGAF00005394256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126440555
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACAAT4148608232.810740193286875No Hit
ACATTCCG3013385223.832426233813987No Hit
TGTGATGC2726578621.564114456789596No Hit
CTGCGGTA2646125720.927824146295468No Hit
GGTGATGC5073820.40128106049518686No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)