FastQCFastQC Report
Fri 10 May 2024
EGAF00005394257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114994456
Total Bases919.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAACTA3465805030.138887739075003No Hit
AGGCTGGT3084787926.825535832788322No Hit
TCATCAAG2680279723.307903643633047No Hit
GTTGGTCC2158673018.771974537624665No Hit
TCATCCAG2551130.2218480863112218No Hit
GGTGGTCC1231920.1071286427930056No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)