FastQCFastQC Report
Wed 8 May 2024
EGAF00005394261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59378268
Total Bases475 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC1862627531.368841879995557No Hit
CATCTCCA1643291327.674961822732858No Hit
GCGGATAG1306815722.00831624122145No Hit
TTATCGTT1043728917.577624527546003No Hit
GCGGCTAG1722790.29013813606014915No Hit
CATCTCAA782610.13180074568695738No Hit
TTATCGTA679330.11440717671320423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)