FastQCFastQC Report
Wed 8 May 2024
EGAF00005394267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58302646
Total Bases466.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACC1582284427.139152483748337No Hit
ATCTCTGT1468603725.18931473538954No Hit
TAGCTCTA1368930423.47973023385594No Hit
GGAGAGAG1057221418.133334806108113No Hit
GGAGCGAG30420805.2177391743078No Hit
GGCGAGAG706170.12112143246466037No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)