FastQCFastQC Report
Fri 10 May 2024
EGAF00005394269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47197450
Total Bases377.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC1291918027.37262288534656ABI Solid3 Adapter A (100% over 8bp)
ATCATGCA1211380125.666219255489438No Hit
CCGGGTAT1141406324.183643395988554No Hit
TAACAAGG1033454821.89641177648369No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)