FastQCFastQC Report
Fri 10 May 2024
EGAF00005394272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45904387
Total Bases367.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT1438951331.34670549026175No Hit
ACAAGGTA1193780626.00580637314686No Hit
GTGGTACC1025753322.345430731925468No Hit
TACTATAG872404119.00480884321579No Hit
TACTCTAG1403310.3057028078819569No Hit
TCCTATAG625420.1362440587650152No Hit
CGTCCCGA531090.11569482454912208No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)