FastQCFastQC Report
Fri 10 May 2024
EGAF00005394276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45670464
Total Bases365.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTAGA1499133132.825002610001945No Hit
CAGTACTG1092748323.92680529805872No Hit
TTCCCGAC1050425523.000105713837286No Hit
AGTAGTCT894952319.595866159800785No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)