FastQCFastQC Report
Fri 10 May 2024
EGAF00005394278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52947007
Total Bases423.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT1603909130.29272457270342No Hit
TGTGCGGG1491202028.164047119792812No Hit
ACCATAAC1422969226.87534726939334No Hit
GTGTATTA701894613.256549137895558No Hit
GTGAATTA1142320.21574779477147782No Hit
CAACGCCA985860.18619749365625143No Hit
TGTGCGGA911100.17207771536547856No Hit
GGGTATTA872950.1648723977920036No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)