FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14791690
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCAGA1299550.019.7227482
CGCAGAG1300650.019.706173
GCAGAGC1303650.019.6800354
TGCGCAG1325650.019.563831
GCTCAAC1316250.019.5406959
AGCTCAA1317600.019.5138448
GCAGGAG388900.019.4823066
AGAGCTC1313950.019.4519426
CAGAGCT1317350.019.4343785
GAGCTCA1319000.019.4221977
TTGTAGG313650.019.4145071
CTCAACT1328150.019.33399210
AGGAGAG294500.019.2691045
TCAACTA357100.019.16713711
AAGTGCA398450.019.1572532
TGCAGGA396200.019.153635
GGAGTTT401350.019.1193089
TAAGTGC416250.019.117781
TAGGAGA295450.019.0751514
GTGCAGG398950.019.036644
Produced by FastQC (version 0.11.5)