FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15743190
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCAGA1360650.019.7339952
CGCAGAG1362650.019.7048263
GCAGAGC1366650.019.654394
GCTCAAC1382050.019.5118319
TGCGCAG1394800.019.509071
AGCTCAA1383900.019.4771398
CAGAGCT1380350.019.4462815
AGAGCTC1382550.019.4066586
GAGCTCA1384650.019.3844477
GCAGGAG401600.019.3790256
TTGTAGG333200.019.3516041
CTCAACT1394700.019.29399310
AGGAGAG311300.019.2923345
TCAACTA367600.019.16094211
AAGTGCA409850.019.1223852
TAGGAGA312350.019.109034
TAAGTGC429100.019.0456261
GGAGTTT414500.019.0313879
TGCAGGA409050.019.0285195
TGTAGGA319250.019.0109332
Produced by FastQC (version 0.11.5)