FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16349328
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCAGA1399950.019.7431852
CGCAGAG1402300.019.7171693
GCAGAGC1406350.019.6798744
GCTCAAC1420850.019.5484169
AGCTCAA1423000.019.5041248
TGCGCAG1434650.019.4962371
CAGAGCT1421200.019.4538385
GAGCTCA1422900.019.4206987
TTGTAGG343100.019.4082471
AGAGCTC1422500.019.4079426
GCAGGAG434650.019.4055736
CTCAACT1435800.019.3100510
AGGAGAG321200.019.2799825
TCAACTA380950.019.16149311
AAGTGCA443800.019.1253682
TAGGAGA322400.019.1182734
GGAGTTT445900.019.1152679
TGCAGGA442400.019.0950095
TGTAGGA328400.019.0922072
GTGCAGG443500.019.0431394
Produced by FastQC (version 0.11.5)