FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91216707
Sequences flagged as poor quality0
Sequence length28
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACTGAG1010850.020.9766142
ACTGCTC1307400.020.843621
AGTCTAG1137400.020.4909257
TCTAGCC1055200.020.484969
CTAAACA1220300.020.46335810
GCTAAAC1222050.020.438699
CTAGCCG1065950.020.26998310
ACACTGA1211600.020.2259981
GTCTAGC1120850.020.2105188
TGAGTCT1064200.020.159515
CCTTTAG523550.020.1400682
GCTCAGC1219750.019.9910244
TGCTCAG1240400.019.9619333
GAGTCTA1090150.019.9026246
CTGCTCA1246200.019.8655132
CCCGAAA390350.019.6539710
CTGAGTC1081200.019.6207434
AAGAATG312450.019.6117787
TTGGGAC561050.019.5185019
CAGCCCG327600.019.2756047
Produced by FastQC (version 0.11.5)