EGAF00005394877 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005394877
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12923625
Sequences flagged as poor quality	0
Sequence length	91
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT	839670	6.497170878913618	No Hit
GGGAAGTTTCTGGCGGTCACGCCCTGTCCGCTTTCGCTCCAGGTCACACT	119664	0.9259321591271799	No Hit
CACGCTGCTCGTATCCGACGGGGAATTCTCACAGGAGACGAGGGGGAAAA	91916	0.7112245983615278	No Hit
TAGCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGT	49774	0.3851396183346391	No Hit
TAGCTGCTGGCCGCGTACTTGTTGTTGCTCTGTTTGGAGGGTTTGGTGGT	35900	0.27778583795181305	No Hit
GTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATTCA	34760	0.26896478348760505	No Hit
GGAAGTTTCTGGCGGTCACGCCCTGTCCGCTTTCGCTCCAGGTCACACTG	28195	0.21816634264767046	No Hit
CCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGC	22676	0.17546160616700035	No Hit
GGGAAGTTTCTGGCGGTCACGTTCTGTCCGCTTTCGCTCCAGGTCACACT	18416	0.1424987184323284	No Hit
AGCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTC	18272	0.14138447997369158	No Hit
GGTGGTACCCAGTTATCAAGCATGCCAGGACCACAGGGCTGTTATCCTTT	17082	0.13217653715579025	No Hit
CGCTGCTCGTATCCGACGGGGAATTCTCACAGGAGACGAGGGGGAAAAGG	16927	0.13097718325934093	No Hit
CTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCTC	15841	0.12257396821712176	No Hit
GCTGCTGGCCGCGTACTTGTTGTTGCTTTGTTTGGAGGGTGTGGTGGTCT	15118	0.11697956262271614	No Hit
AGCTGCTGGCCGCGTACTTGTTGTTGCTCTGTTTGGAGGGTTTGGTGGTC	13392	0.1036241766532223	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTAT	93060	83.73468	1
CGTTATC	93790	83.10118	2
TTATCCA	97690	79.737686	4
GTTATCC	100865	77.31621	3
TATCCAC	101650	76.878	5
ATCCACC	102160	76.55246	6
CACGCTG	12355	74.59608	1
TCCACCT	110990	70.35497	7
CCACCTT	110870	70.31997	8
CACCTTC	114465	68.174545	9
GGAAGTT	22065	59.542976	2
AAGTTTC	22275	58.74446	4
TTCTGGC	23435	57.196796	8
CTCGTAT	16035	57.168415	8
ACGCTGC	16250	56.733772	2
TTTCTGG	23775	56.20009	7
TCGTATC	16315	56.083088	9
GCTCGTA	16405	55.930843	7
CTGCTCG	16515	55.661243	5
TGCTCGT	17115	53.78442	6