FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57246358
Sequences flagged as poor quality0
Sequence length28
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCACC1387800.021.416572
CCAAGGA1391800.021.1565367
CCACCAA1400800.021.0985934
AGGCCAC1485900.021.0855241
AGACGTT1194450.021.0420531
ACCAAGG1419550.020.9668946
CAAGGAC1523150.020.9193848
CACCAAG1432850.020.8690385
GAGATGA1000000.020.8682569
AGAGATG1003550.020.80438
AGGACAC1537700.020.79869510
CAGAGAT1002850.020.5336487
GCCACCA1446350.020.5336273
AAGGACA1536350.020.481199
AAGAAGG303300.020.3525287
TTCAAGT1005800.020.2853226
CTCACAC1161450.020.2554991
GACGTTC1052950.020.2092132
TTGAAAG337650.020.1981053
GACTTCC336100.020.117772
Produced by FastQC (version 0.11.5)