FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47888746
Sequences flagged as poor quality0
Sequence length28
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCCACC1119200.021.3897322
CCAAGGA1122800.021.1437687
AGACGTT980550.021.0719851
CCACCAA1130150.021.0503144
AGGCCAC1202750.021.0122051
CAAGGAC1231400.020.9583648
ACCAAGG1142550.020.9438656
GAGATGA836300.020.8349979
CACCAAG1158100.020.7918645
AGAGATG840150.020.757858
AGGACAC1249550.020.70499410
CAGAGAT838300.020.505817
AAGGACA1243650.020.4706679
GCCACCA1171500.020.4254263
CTCACAC962900.020.419271
TTCAAGT825600.020.3176356
GACGTTC863850.020.2965582
AAGAAGG249950.020.234337
TTGAAAG278150.020.0927243
GTTCAAG838100.020.0723925
Produced by FastQC (version 0.11.5)