FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58381103
Sequences flagged as poor quality0
Sequence length28
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATTCC571600.020.1978638
GAGAATG340100.020.163947
AATTCCT573250.020.1191089
AGAATGT393150.019.9949328
TATTGAG294600.019.964793
GTCGACA407000.019.9496827
GTCCAAT556800.019.8555565
ATTGAGA257450.019.8377824
TATGCCC200600.019.7741811
CGGTCCA612150.019.7050573
TTGAGAG256600.019.634695
ATGCGAT333250.019.6029361
ATTCCTT589300.019.56181710
GGTATTG371950.019.5453741
CCTATTA304850.019.516161
TCGACAG500000.019.497418
GACAGCC505750.019.26349410
CGACAGC507050.019.2206159
TGTCGAC418100.019.0964226
TCCAATT576200.019.0724936
Produced by FastQC (version 0.11.5)