FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50853202
Sequences flagged as poor quality0
Sequence length28
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGAATG301150.020.174087
CAATTCC501150.020.1720188
ATTGAGA239800.020.1514324
AATTCCT501100.020.1265859
TATTGAG274400.020.0678393
AGAATGT346400.020.022068
GTCGACA346050.019.9533047
TTGAGAG239550.019.906485
GTCCAAT487050.019.8706465
TATGCCC177700.019.845391
GGTATTG335800.019.745471
CGGTCCA537650.019.729063
ATGCGAT284250.019.54061
ATTCCTT518650.019.44766810
GACAGCC428650.019.38927810
CCTATTA264850.019.3350561
TCGACAG430400.019.3245128
GGGACCT163900.019.2472081
TGGGCGT234850.019.1671681
GTATTGA260350.019.1295622
Produced by FastQC (version 0.11.5)