FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005394952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005394952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74841595
Sequences flagged as poor quality0
Sequence length28
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATTCC736200.020.2184548
GAGAATG439950.020.1057667
AATTCCT739650.020.0991049
GTCGACA517400.020.032297
TATTGAG392900.019.9755153
AGAATGT506650.019.9536048
ATTGAGA344900.019.9489574
GTCCAAT715700.019.8891935
TATGCCC259950.019.8599111
CGGTCCA787500.019.8178563
TTGAGAG343150.019.7153745
ATGCGAT412450.019.6156331
GGTATTG486500.019.549741
ATTCCTT760400.019.5361710
CCTATTA393750.019.4657861
TCGACAG642950.019.4072788
GACAGCC642800.019.40033310
CGACAGC647150.019.269939
TCCAATT737600.019.2002336
GGTCCAA760000.019.1860244
Produced by FastQC (version 0.11.5)