FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50182289
Sequences flagged as poor quality0
Sequence length28
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCTGGC2856300.021.6492810
ATGCTGG2862650.021.6281559
CATGCTG2870900.021.5913568
GCCATGC2843800.021.5722926
GGCCATG2842750.021.5704785
CGGACGT2196000.021.5075261
CGTGTCG2160200.021.4208935
AGGCGAA1158950.021.41601810
GGACGTG2162450.021.4027822
ACAGGCC2884000.021.3825912
CAGGCCA2884050.021.3477863
TCGCGAA2181550.021.3175169
GTCGCGA2181400.021.3155168
ACGTGTC2166350.021.305754
AGGCCAT2884150.021.2894544
CGCGAAA2197850.021.28303510
TCACTCG1065950.021.2799727
ACTCGAC1083950.021.2447229
CACAGGC2955150.021.2347351
CCCAGTT1202300.021.2236561
Produced by FastQC (version 0.11.5)