Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005395174 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 28025 |
Sequences flagged as poor quality | 0 |
Sequence length | 8 |
%GC | 51 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTCCAAG | 6396 | 22.822479928635147 | No Hit |
CCGAACTC | 5877 | 20.970561998215878 | No Hit |
AACGGTCA | 5439 | 19.407671721677076 | No Hit |
TTATTGGT | 4484 | 16.0 | No Hit |
AAAGGTCA | 1072 | 3.825156110615522 | No Hit |
CCCAACTC | 604 | 2.1552185548617304 | No Hit |
GGTCAAAG | 434 | 1.5486173059768065 | No Hit |
GGTCCAAT | 414 | 1.4772524531668152 | No Hit |
CCGAACAC | 336 | 1.1989295272078502 | No Hit |
AACAGTCA | 227 | 0.8099910793933988 | No Hit |
CCGATCTC | 224 | 0.7992863514719001 | Illumina Paired End PCR Primer 2 (100% over 8bp) |
AACGCTCA | 221 | 0.7885816235504014 | No Hit |
AACGGTAA | 206 | 0.7350579839429081 | No Hit |
CCAAACTC | 190 | 0.6779661016949152 | No Hit |
GGTCCAGG | 170 | 0.6066012488849242 | No Hit |
GCGAACTC | 138 | 0.49241748438893845 | No Hit |
CCTAACTC | 134 | 0.47814451382694023 | No Hit |
GGTCCAAA | 127 | 0.45316681534344333 | No Hit |
AACGATCA | 80 | 0.2854594112399643 | No Hit |
AACCGTCA | 73 | 0.2604817127564674 | No Hit |
GGCCCAAG | 71 | 0.25334522747546834 | No Hit |
GGGCCAAG | 68 | 0.24264049955396969 | No Hit |
GGTCCATG | 49 | 0.17484388938447815 | No Hit |
GGTCCACG | 46 | 0.1641391614629795 | No Hit |
GGTCCCAG | 42 | 0.14986619090098127 | No Hit |
AACGGTTA | 42 | 0.14986619090098127 | No Hit |
TTATTGAT | 41 | 0.1462979482604817 | No Hit |
AACTGTCA | 41 | 0.1462979482604817 | No Hit |
GGTACAAG | 40 | 0.14272970561998216 | No Hit |
GTATTGGT | 39 | 0.13916146297948262 | No Hit |
GGTTCAAG | 38 | 0.13559322033898305 | No Hit |
CACGGTCA | 35 | 0.12488849241748438 | No Hit |
ATCGGTCA | 34 | 0.12132024977698484 | No Hit |
CGGAACTC | 34 | 0.12132024977698484 | No Hit |
GACGGTCA | 29 | 0.10347903657448707 | No Hit |
Adapter Content
Can't analyse adapters as read length is too short (12 vs 0)