FastQCFastQC Report
Sat 11 May 2024
EGAF00005395177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144158301
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAGCAAC3995146927.713609776796687No Hit
CGCAATTT3700268725.668093161003615No Hit
TTTCGCGA3409655823.652164158066764No Hit
GAGTTGCG3138480721.771071649907974No Hit
CGCAATTA4974090.34504360591763633No Hit
GAGTTGCA1876070.1301395748275363No Hit
ACAGCAAA1664220.11544392438420871No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)