FastQCFastQC Report
Wed 15 May 2024
EGAF00005395180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500375740
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACGT13540896927.06145765580082No Hit
TGTTCACG12258855724.499300665535863No Hit
ACCATTAA12109624924.201063185037707No Hit
GAACGGTC11517783023.018268231789175No Hit
ACCATAAA17977750.3592850045048147No Hit
TGTTCACA7796530.15581350926405824No Hit
GAACGGTA6591260.13172621038741805No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)