FastQCFastQC Report
Wed 1 May 2024
EGAF00005395186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201934919
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCCGGC6465645932.01846382992334No Hit
AGATAACA6005280529.738692692371842No Hit
CTTATTTG4797607923.75818864690757No Hit
GCGGGCAT2738929313.563425848107032No Hit
CTTATTTA3624820.1795043679394548No Hit
TACCCGGA2297240.11376140448497665No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)