FastQCFastQC Report
Wed 8 May 2024
EGAF00005395189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96380005
Total Bases771 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACCAGT2657807527.576337021356245No Hit
ATTGTTTC2256012223.40747129033662No Hit
TAGTACCA2160328522.41469586975016No Hit
CGCAGGAG1413086814.66161783245394No Hit
CGCCGGAG1054403810.940067911388882No Hit
ATTGTTTA1385520.14375595851027398No Hit
GCACCAGA1226810.12728885000576623No Hit
TAGTACAA1110920.11526457173352501No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)