FastQCFastQC Report
Wed 8 May 2024
EGAF00005395192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33023028
Total Bases264.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGACAAT901063127.285901825841048No Hit
CGCGTGCA850319925.74930136630717No Hit
GAATACTG818736024.792880895113555No Hit
ATTCGTGC700614021.21592241632112No Hit
TCGACAAA628120.19020666427076283No Hit
GAATACTA462070.13992357090936663No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)