FastQCFastQC Report
Wed 8 May 2024
EGAF00005395198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85270329
Total Bases682.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGTGAT2428326028.477971511051635No Hit
GACCGCCA2361090127.689468630993552No Hit
TCGAATTG1867530221.90128995514958No Hit
ATTTCAGC1802161221.134680974433675No Hit
GACCGCAA1593860.18691847664854208No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)