FastQCFastQC Report
Wed 1 May 2024
EGAF00005395201

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395201
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences214228346
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCAATT5952592627.78620435224758No Hit
AGAACGCC5691035026.565275353430586No Hit
GTCTTTGA4926876022.998245059503002No Hit
CATGGCAG4657602821.741300285257303No Hit
TCGCAATA4237280.19779268612753984No Hit
GTCTTTAA3309950.1545056973926317No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)