FastQCFastQC Report
Fri 10 May 2024
EGAF00005395204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133626324
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTAAC3524284426.37417759093635No Hit
GACAGGCT3396469625.417668452811736No Hit
AGGGACTG3305596324.737613076896437No Hit
TTATCTGA3030746122.680756375517745No Hit
CCTCTAAA1718120.12857646222461377No Hit
TTATCTAA1496940.11202433436693209No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)