FastQCFastQC Report
Wed 1 May 2024
EGAF00005395207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184060349
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCAT5593695230.39054978647248No Hit
TGCGAATG4468435624.27701362230928No Hit
ACATTGGC4146311622.52691371350165No Hit
CTTAGTCA4040770321.953507759566403No Hit
TGCGAATA2783860.15124713253694852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)