FastQCFastQC Report
Fri 10 May 2024
EGAF00005395210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121546464
Total Bases972.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGAAT3295162427.110310670987513No Hit
TGCGATCA3082167725.357938014552197No Hit
GCGATCGG2879244323.6884250289667No Hit
AAATCGTC2780310522.874466343998293No Hit
GCGATCGA2105340.17321277236004168No Hit
TGCGATGA1391150.11445417285031016No Hit
AAATCGTA1222220.10055578416497579No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)