FastQCFastQC Report
Fri 3 May 2024
EGAF00005395213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179500896
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTGTC4845864926.996327082400747No Hit
GTAAACAT4457721224.833977430396782No Hit
AGCTGACG4428921624.673534777230305No Hit
TATCCTGA4096337722.820708928383286No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)