FastQCFastQC Report
Sat 4 May 2024
EGAF00005395216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences341651692
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCTCT8702284025.471215872099357No Hit
AACGACAC8528495724.96254489499206No Hit
GCATGATA8471638524.796126284075303No Hit
TTGATGGG8060257723.592032144831293No Hit
TTGATGGA10270680.3006184438858274No Hit
CGTCCTCA6113220.17893135445089497No Hit
AACGACAA4124110.12071094909139217No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)