FastQCFastQC Report
Wed 1 May 2024
EGAF00005395219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201044784
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTTCTC5525721827.485029405189643No Hit
TAGAGTAA5507672127.395249906110468No Hit
CCTGCGGT4465756422.212744400272527No Hit
GTACAACG4381488621.79359500319093No Hit
TCGAGTAA5521800.2746552230870113No Hit
AGCTTCTA3329570.16561334911330006No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)