FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15302782
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA475741131.08853671182142No Hit
ACAGAGGT373263224.391852409581475No Hit
GTCCTAAC349389022.83173085782703No Hit
TATAGTTG312944920.450196572100417No Hit
CGGTCCAA298510.19506910573515326No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)