FastQCFastQC Report
Wed 1 May 2024
EGAF00005395228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences209802256
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGGAA6066556628.915592785618095No Hit
TCACACTC6004070728.617760430564676No Hit
CAGTCTGG4722820022.510816089603917No Hit
GGCATACT3929821118.731071700201355No Hit
ATTGGAAA6553120.31234745159270355No Hit
TCACACTA4828370.2301390886854906No Hit
CAGTCTGA3227670.15384343626886451No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)