FastQCFastQC Report
Wed 8 May 2024
EGAF00005395230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11642618
Total Bases93.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACTC331454628.46907800290278No Hit
GCCTTGGT319531027.444944083882167No Hit
AAACCTCA279243823.984622702557104No Hit
TGTAGAAG214515418.425014030349534No Hit
AAACATCA295920.25416963779108787No Hit
AAACCTAA192200.16508314538877766No Hit
AAAACTCA153790.13209228371144704No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)