FastQCFastQC Report
Wed 1 May 2024
EGAF00005395233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences204111695
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT6353404631.127097347361698No Hit
GGGACTAC5806046728.445438660435407No Hit
CATCAGTG4136972520.26817963566468No Hit
TCATGCGA3940580419.306000080005216No Hit
ATCGTACA2902620.14220743206311623No Hit
TCATGCAA2668810.13075242944800394No Hit
CATCAGTA2438070.11944783467698898No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)