FastQCFastQC Report
Wed 8 May 2024
EGAF00005395236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6830395
Total Bases54.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCTCTC184415226.999199899859377No Hit
GTCTCTCG182197926.67457738534887No Hit
CGGAGGGA174982525.618210952660863No Hit
TCAGAAAT127887918.723353481021228No Hit
CATCTCTC172350.2523280132408155No Hit
GTCTCTCA132600.19413225735846903No Hit
CGGGGGGA128850.18864209170919105No Hit
ACTCTCTC127760.18704628356046757No Hit
TATCTCTC94040.1376787140421601No Hit
CGGAGGAA83500.12224768845725614No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)