FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7614648
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTTAT214495028.168734785902117No Hit
TAGACACC205229826.951974667771907No Hit
ATTTGCTA172458222.64821696288522No Hit
CCACAGGG154454720.28389230861361No Hit
CCACAGGA373670.4907252442923166No Hit
TAAACACC114220.1500003677123355No Hit
TAGACACA97550.12810835116738162No Hit
GGCGTGAT82370.10817308955056097No Hit
GGCGTTAA80220.10534958411734857No Hit
GGCGGTAT77720.10206643826477599No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)