FastQCFastQC Report
Fri 10 May 2024
EGAF00005395246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126865145
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGACGGAT4131737932.5679515835496No Hit
GTCGACTC3074972524.238119146121655No Hit
CCTTTAGA2770097921.83497997026685No Hit
TAGACTCG2564193120.211958926937733No Hit
CGTTTAGA2214350.1745436069142553No Hit
GTCGACTA1736770.13689890946800243No Hit
TAGACTCA1690240.1332312354193108No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)