FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16210576
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCCTT574299435.42745180677109No Hit
TCTCGGGC451931527.87880578703681No Hit
GTATATAG294082218.141378813436365No Hit
AGGATACA267826116.521689297160076No Hit
CGGATACA1134140.6996296738622984No Hit
CACGCCTA480150.29619552075139094No Hit
AGGATAAA212590.13114277987407727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)