FastQCFastQC Report
Fri 10 May 2024
EGAF00005395252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124010110
Total Bases992 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCTCT3344009526.965619980499977No Hit
CCGTTGAA3258699026.27768816590841No Hit
ATCCAAGG2977725624.011958379844998No Hit
GGAAGCTC2702331521.791219280428024No Hit
TATGCTCA1572390.12679530725357796No Hit
CCGTTAAA1508480.12164169518114289No Hit
ATCCAAGA1357140.10943785147839963No Hit
GGAAGCTA1257130.10137318642810655No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)