FastQCFastQC Report
Wed 8 May 2024
EGAF00005395259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5298995
Total Bases42.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAAAT138318326.102742123742335No Hit
TAGTGCGG131384224.794173234736018No Hit
ACACCTTC126484523.869526202610118No Hit
GGTATGCA124347123.466166697647385No Hit
TAGTGCGA201670.38058160085072734No Hit
CTCGAAAC135320.2553691784951675No Hit
ACACCTTA85650.16163442313117865No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)