FastQCFastQC Report
Wed 1 May 2024
EGAF00005395264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228404642
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCGAAC6890737130.168988859692263No Hit
ATGAAGTA5774138525.28030275321637No Hit
TCTTTCGT5265275523.052401448128187No Hit
GAAGCTCG4722009620.673877547550017No Hit
GAAGCTCA2944140.12890018233517336No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)