FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11013419
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGGGTG323950329.414144690218357No Hit
GTGCCCGT266586324.20558956305939No Hit
CATATAAC244260922.17848063348902No Hit
AGCTATCA239398621.73699193683633No Hit
CAAATAAC996860.9051321846558276No Hit
GGGCCCGT393460.35725509035840736No Hit
CCTATAAC129190.11730235633457693No Hit
GTGCCCGA118660.10774129269030806No Hit
AGCTATAA112160.10183940155187049No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)