FastQCFastQC Report
Fri 3 May 2024
EGAF00005395270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165551155
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCGTCT4834253629.20096570754822No Hit
GGCTCCAC4283489525.87411425791623No Hit
TATAAGGA3881475623.4457778322356No Hit
ATAGTATG3399581820.534932540941803No Hit
CCGCGTCA2159280.13042977561829758No Hit
GGCTCCAA2157780.13033916918308422No Hit
TATAAGAA1992720.12036883705220904No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)