FastQCFastQC Report
Fri 3 May 2024
EGAF00005395275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157518299
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACATGA4131344226.227709581856264No Hit
ACGGGACT4041259225.655807773800298No Hit
CTTTCGAC3786694224.039709824443953No Hit
TGCATCTG3652951723.190649741589706No Hit
TGCATCTA1914260.12152619804509188No Hit
ACGGGACA1881920.11947310324878509No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)