FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395278

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395278
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21961718
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTCAAG584747826.625776726574852No Hit
ACTGTGGC576039326.229245817654157No Hit
TACCACCA516578423.521766375472083No Hit
CTAAGTTT483326222.007668070412343No Hit
GGGTCCAG842250.3835082483073501No Hit
CTAAGTTA404310.18409761932103855No Hit
TACCACAA376110.17125709382116644No Hit
TAACACCA344030.15664985772060272No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)